4KRO Nanobody/VHH domain EgA1 in complex with the extracellular region of EGFR date 2013-05-16
authors Ferguson, K.M., Schmitz, K.R.
compound source
symmetry
R_factor
R_Free 0.2795
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.05
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural evaluation of EGFR inhibition mechanisms for nanobodies/VHH domains., Schmitz KR, Bagchi A, Roovers RC, van Bergen en Henegouwen PM, Ferguson KM, Structure. 2013 Jul 2;21(7):1214-24. doi: 10.1016/j.str.2013.05.008. Epub 2013, Jun 20. PMID:23791944
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (297 Kb) [Save to disk]
  • Biological Unit Coordinates (4kro.pdb1.gz) 289 Kb
  • LPC: Ligand-Protein Contacts for 4KRO
  • CSU: Contacts of Structural Units for 4KRO
  • Structure Factors (462 Kb)
  • Retrieve 4KRO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KRO from S2C, [Save to disk]
  • Re-refined 4kro structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KRO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KRO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KRO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kro_D] [4kro] [4kro_A] [4kro_C] [4kro_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4KRO: [FU] [IG_like] [IGv ] by SMART
    • Other resources with information on 4KRO
  • Community annotation for 4KRO at PDBWiki (http://pdbwiki.org)

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