4KT0 Crystal structure of a virus like photosystem I from the cyanobacterium Synechocystis PCC 6803 date 2013-05-19
authors Mazor, Y., Nataf, D., Toporik, H., Nelson, N.
compound source
symmetry
R_factor
R_Free 0.2446
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand BCR, CL, CL0, CLA, LHG, LMG, LMU, PQN, SF4 enzyme
Gene BEST7613 ; BEST7613 ; BEST7613 ; BEST7613 ; BEST7613 ; BEST7613 ; BEST7613 ; BEST7613 ; BEST7613 ; MYO ; MYO ; MYO ; MYO ; MYO ; MYO ; MYO ; MYO
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • B
  • electron transfer activity


    • C


    D


    E


    F


    J


    K


    M


    Primary referenceCrystal structures of virus-like photosystem I complexes from the mesophilic cyanobacterium Synechocystis PCC 6803., Mazor Y, Nataf D, Toporik H, Nelson N, Elife. 2013 Jan 1;3:e01496. doi: 10.7554/eLife.01496. PMID:24473073
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (972 Kb) [Save to disk]
  • Biological Unit Coordinates (4kt0.pdb1.gz) 920 Kb
  • LPC: Ligand-Protein Contacts for 4KT0
  • CSU: Contacts of Structural Units for 4KT0
  • Structure Factors (1823 Kb)
  • Retrieve 4KT0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KT0 from S2C, [Save to disk]
  • Re-refined 4kt0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KT0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KT0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KT0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kt0_B] [4kt0_K] [4kt0_J] [4kt0_A] [4kt0_M] [4kt0_E] [4kt0] [4kt0_F] [4kt0_C] [4kt0_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4KT0
  • Community annotation for 4KT0 at PDBWiki (http://pdbwiki.org)

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