4KVL Crystal structure of Oryza sativa fatty acid alpha-dioxygenase Y379F with palmitic acid date
authors Zhu, G., Koszelak-Rosenblum, M., Malkowski, M.G.
compound source
symmetry
R_factor
R_Free 0.18582
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.96
ligand 1PE, BOG, CA, CL, HEM, IMD, PG4, PGE, PLM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • peroxidase activity


    • Primary referenceCrystal Structures of alpha-Dioxygenase from Oryza sativa: Insights into Substrate Binding and Activation by Hydrogen Peroxide., Zhu G, Koszelak-Rosenblum M, Malkowski MG, Protein Sci. 2013 Aug 12. doi: 10.1002/pro.2327. PMID:23934749
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk]
  • Biological Unit Coordinates (4kvl.pdb1.gz) 214 Kb
  • LPC: Ligand-Protein Contacts for 4KVL
  • CSU: Contacts of Structural Units for 4KVL
  • Structure Factors (1385 Kb)
  • Retrieve 4KVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KVL from S2C, [Save to disk]
  • Re-refined 4kvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KVL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KVL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kvl] [4kvl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4KVL
  • Community annotation for 4KVL at PDBWiki (http://pdbwiki.org)

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