4L01 Crystal structure of the V658F apo Jak1 pseudokinase domain date 2013-05-30
authors Toms, A.V., Rogers, J.M., Eck, M.J.
compound source
symmetry
R_factor
R_Free 0.23266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of a pseudokinase-domain switch that controls oncogenic activation of Jak kinases., Toms AV, Deshpande A, McNally R, Jeong Y, Rogers JM, Kim CU, Gruner SM, Ficarro SB, Marto JA, Sattler M, Griffin JD, Eck MJ, Nat Struct Mol Biol. 2013 Sep 8. doi: 10.1038/nsmb.2673. PMID:24013208
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (4l01.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (4l01.pdb2.gz) 92 Kb
  • Biological Unit Coordinates (4l01.pdb3.gz) 182 Kb
  • CSU: Contacts of Structural Units for 4L01
  • Structure Factors (963 Kb)
  • Retrieve 4L01 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4L01 from S2C, [Save to disk]
  • Re-refined 4l01 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4L01 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4L01
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4L01, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l01_A] [4l01_B] [4l01]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4L01: [STYKc ] by SMART
    • Other resources with information on 4L01
  • Community annotation for 4L01 at PDBWiki (http://pdbwiki.org)

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