4L7F Co-crystal Structure of JNK1 and AX13587 date 2013-06-13
authors Walter, R.L., Ranieri, G.M., Riggs, A.M., Weissig, H., Li, B., Shreder, K.R.
compound source
symmetry
R_factor
R_Free 0.1977
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand 1V5 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHit-to-lead optimization and kinase selectivity of imidazo[1,2-a]quinoxalin-4-amine derived JNK1 inhibitors., Li B, Cociorva OM, Nomanbhoy T, Weissig H, Li Q, Nakamura K, Liyanage M, Zhang MC, Shih AY, Aban A, Hu Y, Cajica J, Pham L, Kozarich JW, Shreder KR, Bioorg Med Chem Lett. 2013 Jul 8. pii: S0960-894X(13)00820-2. doi:, 10.1016/j.bmcl.2013.06.087. PMID:23916259
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (4l7f.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 4L7F
  • CSU: Contacts of Structural Units for 4L7F
  • Structure Factors (1156 Kb)
  • Retrieve 4L7F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4L7F from S2C, [Save to disk]
  • Re-refined 4l7f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4L7F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4L7F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4L7F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l7f] [4l7f_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4L7F: [S_TKc ] by SMART
    • Other resources with information on 4L7F
  • Community annotation for 4L7F at PDBWiki (http://pdbwiki.org)

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