4L7X Crystal structure of the DIDO PHD finger in complex with H3K4me3 date 2013-06-14
authors Tong, Q., Gatchalian, J., Kutateladze, T.G.
compound source
symmetry
R_factor
R_Free 0.1422
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.35
ligand M3L, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDido3 PHD Modulates Cell Differentiation and Division., Gatchalian J, Futterer A, Rothbart SB, Tong Q, Rincon-Arano H, Sanchez de Diego A, Groudine M, Strahl BD, Martinez-A C, van Wely KH, Kutateladze TG, Cell Rep. 2013 Jul 11;4(1):148-58. doi: 10.1016/j.celrep.2013.06.014. Epub 2013, Jul 3. PMID:23831028
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (4l7x.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 4L7X
  • CSU: Contacts of Structural Units for 4L7X
  • Structure Factors (201 Kb)
  • Retrieve 4L7X in mmCIF format [Save to disk]
  • Re-refined 4l7x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4L7X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4L7X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4L7X, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l7x_U] [4l7x_A] [4l7x]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4L7X: [PHD ] by SMART
    • Other resources with information on 4L7X
  • Community annotation for 4L7X at PDBWiki (http://pdbwiki.org)

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