4LOS C1s CUB2-CCP1 date 2013-07-13
authors Wallis, R., Girija, U.Venkatraman., Moody, P.C.E., Marshall, J.E., Gingras, A.R.
compound source
symmetry
R_factor
R_Free 0.2116
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of the C1q/C1s interaction and its central role in assembly of the C1 complex of complement activation., Venkatraman Girija U, Gingras AR, Marshall JE, Panchal R, Sheikh MA, Gal P, Schwaeble WJ, Mitchell DA, Moody PC, Wallis R, Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):13916-20. doi:, 10.1073/pnas.1311113110. Epub 2013 Aug 6. PMID:23922389
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (4los.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 4LOS
  • CSU: Contacts of Structural Units for 4LOS
  • Structure Factors (168 Kb)
  • Retrieve 4LOS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LOS from S2C, [Save to disk]
  • Re-refined 4los structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LOS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LOS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LOS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4los_A] [4los]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4LOS: [CCP] [CUB ] by SMART
    • Other resources with information on 4LOS
  • Community annotation for 4LOS at PDBWiki (http://pdbwiki.org)

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