4LRM EGFR D770_N771insNPG in complex with PD168393 date 2013-07-20
authors Yun, C.H., Eck, M.J.
compound source
symmetry
R_factor
R_Free 0.2638
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.53
ligand YUN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceStructural, Biochemical, and Clinical Characterization of Epidermal Growth Factor Receptor (EGFR) Exon 20 Insertion Mutations in Lung Cancer., Yasuda H, Park E, Yun CH, Sng NJ, Lucena-Araujo AR, Yeo WL, Huberman MS, Cohen DW, Nakayama S, Ishioka K, Yamaguchi N, Hanna M, Oxnard GR, Lathan CS, Moran T, Sequist LV, Chaft JE, Riely GJ, Arcila ME, Soo RA, Meyerson M, Eck MJ, Kobayashi SS, Costa DB, Sci Transl Med. 2013 Dec 18;5(216):216ra177. doi: 10.1126/scitranslmed.3007205. PMID:24353160
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (489 Kb) [Save to disk]
  • Biological Unit Coordinates (4lrm.pdb1.gz) 102 Kb
  • Biological Unit Coordinates (4lrm.pdb2.gz) 98 Kb
  • Biological Unit Coordinates (4lrm.pdb3.gz) 100 Kb
  • Biological Unit Coordinates (4lrm.pdb4.gz) 99 Kb
  • Biological Unit Coordinates (4lrm.pdb5.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 4LRM
  • CSU: Contacts of Structural Units for 4LRM
  • Structure Factors (272 Kb)
  • Retrieve 4LRM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LRM from S2C, [Save to disk]
  • Re-refined 4lrm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LRM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LRM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LRM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lrm_A] [4lrm] [4lrm_D] [4lrm_C] [4lrm_E] [4lrm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4LRM: [TyrKc ] by SMART
    • Other resources with information on 4LRM
  • Community annotation for 4LRM at PDBWiki (http://pdbwiki.org)

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