4LVS	DNA polymerase beta mismatched substrate complex with Mn2+, 2.5 min	date
authors	Freudenthal, B.D., Beard, W.A., Shock, D.D., Wilson, S.H.
compound		source
symmetry		R_factor R_Free 0.2806
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.00
ligand	DTP, MN, NA	enzyme
note	4LVS supersedes 4KLP
Gene Ontology	Chain Function Process Component A
Primary reference	Observing a DNA polymerase choose right from wrong., Freudenthal BD, Beard WA, Shock DD, Wilson SH, Cell. 2013 Jul 3;154(1):157-68. doi: 10.1016/j.cell.2013.05.048. PMID:23827680

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (4lvs.pdb1.gz) 70 Kb LPC: Ligand-Protein Contacts for 4LVS CSU: Contacts of Structural Units for 4LVS Structure Factors (366 Kb) Retrieve 4LVS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4LVS from S2C, [Save to disk] Re-refined 4lvs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4LVS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4LVS

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4LVS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4lvs_T] [4lvs] [4lvs_D] [4lvs_P] [4lvs_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4LVS: [HhH1] [POLXc ] by SMART

Other resources with information on 4LVS

Community annotation for 4LVS at PDBWiki (http://pdbwiki.org)

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