4M5O 3-HYDROXY-6-PHENYL-1,2-DIHYDROPYRIDIN-2-ONE bound to influenza 2009 H1N1 endonuclease date 2013-08-08
authors Bauman, J.D., Patel, D., Das, K., Arnold, E.
compound source
symmetry
R_factor
R_Free 0.2184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand EDO, MN, SO4, X48 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystallographic Fragment Screening and Structure-Based Optimization Yields a New Class of Influenza Endonuclease Inhibitors., Bauman JD, Patel D, Baker SF, Vijayan RS, Xiang A, Parhi AK, Martinez-Sobrido L, Lavoie EJ, Das K, Arnold E, ACS Chem Biol. 2013 Sep 13. PMID:23978130
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (4m5o.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (4m5o.pdb2.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 4M5O
  • CSU: Contacts of Structural Units for 4M5O
  • Structure Factors (280 Kb)
  • Retrieve 4M5O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M5O from S2C, [Save to disk]
  • Re-refined 4m5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4M5O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4M5O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M5O, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m5o] [4m5o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4M5O
  • Community annotation for 4M5O at PDBWiki (http://pdbwiki.org)

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