4M77 Crystal structure of Lsm2-8 complex, space group I212121 date 2013-08-12
authors Zhou, L., Hang, J., Zhou, Y., Wan, R., Lu, G., Yan, C., Shi, Y.
compound source
symmetry
R_factor
R_Free 0.2672
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.11
Gene
Ontology
ChainFunctionProcessComponent
A, H


B, I


E, L


F, M


J, C


K, D


N, G


Primary referenceCrystal structures of the Lsm complex bound to the 3' end sequence of U6 small nuclear RNA., Zhou L, Hang J, Zhou Y, Wan R, Lu G, Yin P, Yan C, Shi Y, Nature. 2013 Nov 17. doi: 10.1038/nature12803. PMID:24240276
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (359 Kb) [Save to disk]
  • Biological Unit Coordinates (4m77.pdb1.gz) 174 Kb
  • Biological Unit Coordinates (4m77.pdb2.gz) 179 Kb
  • CSU: Contacts of Structural Units for 4M77
  • Structure Factors (435 Kb)
  • Retrieve 4M77 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M77 from S2C, [Save to disk]
  • Re-refined 4m77 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4M77 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4M77
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M77, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m77_N] [4m77_M] [4m77_E] [4m77_I] [4m77_C] [4m77_A] [4m77_D] [4m77_J] [4m77] [4m77_B] [4m77_G] [4m77_L] [4m77_H] [4m77_F] [4m77_K]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4M77: [Sm ] by SMART
    • Other resources with information on 4M77
  • Community annotation for 4M77 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science