4MDV Crystal structure of calcium-bound annexin (Sm)1 date 2013-08-23
authors Hofmann, A.
compound source
symmetry
R_factor
R_Free 0.2571
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand CA enzyme
Gene SMP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure and immunological properties of the first annexin from Schistosoma mansoni: insights into the structural integrity of the schistosomal tegument., Leow CY, Willis C, Osman A, Mason L, Simon A, Smith BJ, Gasser RB, Jones MK, Hofmann A, FEBS J. 2013 Dec 28. doi: 10.1111/febs.12700. PMID:24428567
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (4mdv.pdb1.gz) 235 Kb
  • Biological Unit Coordinates (4mdv.pdb2.gz) 235 Kb
  • LPC: Ligand-Protein Contacts for 4MDV
  • CSU: Contacts of Structural Units for 4MDV
  • Structure Factors (1553 Kb)
  • Retrieve 4MDV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MDV from S2C, [Save to disk]
  • Re-refined 4mdv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MDV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MDV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MDV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mdv_A] [4mdv_B] [4mdv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4MDV: [ANX ] by SMART
    • Other resources with information on 4MDV
  • Community annotation for 4MDV at PDBWiki (http://pdbwiki.org)

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