4ME6	Crystal structure of D-alanine-D-alanine ligase A from Xanthomonas oryzae pathovar oryzae with ADP	date	2013-08-25
authors	Doan, T.T.N., Kim, J.K., Ahn, Y.J., Lee, B.M., Kang, L.W.
compound		source
symmetry		R_factor R_Free 0.25068
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.10
ligand	ADP, MG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structures of d-alanine-d-alanine ligase from Xanthomonas oryzae pv. oryzae alone and in complex with nucleotides., Doan TT, Kim JK, Ngo HP, Tran HT, Cha SS, Min Chung K, Huynh KH, Ahn YJ, Kang LW, Arch Biochem Biophys. 2014 Jan 16;545C:92-99. doi: 10.1016/j.abb.2014.01.009. PMID:24440607

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk] Biological Unit Coordinates (4me6.pdb1.gz) 109 Kb LPC: Ligand-Protein Contacts for 4ME6 CSU: Contacts of Structural Units for 4ME6 Structure Factors (394 Kb) Retrieve 4ME6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4ME6 from S2C, [Save to disk] Re-refined 4me6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4ME6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4ME6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4ME6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4me6] [4me6_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4ME6

Community annotation for 4ME6 at PDBWiki (http://pdbwiki.org)

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