4MJQ E. coli sliding clamp in complex with Bromfenac date 2013-09-04
authors Yin, Z., Oakley, A.J.
compound source
symmetry
R_factor
R_Free 0.2180
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.73
ligand 27R, CA, CL, EDO, PG4, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • 3'-5' exonuclease activity


    • Primary referenceDNA replication is the target for the antibacterial effects of nonsteroidal anti-inflammatory drugs., Yin Z, Wang Y, Whittell LR, Jergic S, Liu M, Harry E, Dixon NE, Kelso MJ, Beck JL, Oakley AJ, Chem Biol. 2014 Apr 24;21(4):481-7. doi: 10.1016/j.chembiol.2014.02.009. Epub, 2014 Mar 13. PMID:24631121
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (4mjq.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 4MJQ
  • CSU: Contacts of Structural Units for 4MJQ
  • Structure Factors (1073 Kb)
  • Retrieve 4MJQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MJQ from S2C, [Save to disk]
  • Re-refined 4mjq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MJQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MJQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MJQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mjq] [4mjq_B] [4mjq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4MJQ: [POL3Bc ] by SMART
    • Other resources with information on 4MJQ
  • Community annotation for 4MJQ at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science