4MKC Crystal Structure of Anaplastic Lymphoma Kinase Complexed with LDK378 date 2013-09-04
authors Lee, C.C., Spraggon, G.
compound source
symmetry
R_factor
R_Free 0.2179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.01
ligand 4MK, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe ALK inhibitor ceritinib overcomes crizotinib resistance in non-small cell lung cancer., Friboulet L, Li N, Katayama R, Lee CC, Gainor JF, Crystal AS, Michellys PY, Awad MM, Yanagitani N, Kim S, Pferdekamper AC, Li J, Kasibhatla S, Sun F, Sun X, Hua S, McNamara P, Mahmood S, Lockerman EL, Fujita N, Nishio M, Harris JL, Shaw AT, Engelman JA, Cancer Discov. 2014 Mar 27. PMID:24675041
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (4mkc.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 4MKC
  • CSU: Contacts of Structural Units for 4MKC
  • Structure Factors (298 Kb)
  • Retrieve 4MKC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MKC from S2C, [Save to disk]
  • Re-refined 4mkc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MKC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MKC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MKC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mkc_A] [4mkc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4MKC: [TyrKc ] by SMART
    • Other resources with information on 4MKC
  • Community annotation for 4MKC at PDBWiki (http://pdbwiki.org)

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