4MMZ Integrin AlphaVBeta3 ectodomain bound to an antagonistic tenth domain of Fibronectin date
authors Agthoven, J.van., Xiong, J., Arnaout, M.A.
compound source
symmetry
R_factor
R_Free 0.2560
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
ligand BMA, CL, GOL, MAN, MN, NA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • smooth muscle cell migration...

  • Primary referenceStructural basis for pure antagonism of integrin alphaVbeta3 by a high-affinity form of fibronectin., Van Agthoven JF, Xiong JP, Alonso JL, Rui X, Adair BD, Goodman SL, Arnaout MA, Nat Struct Mol Biol. 2014 Apr;21(4):383-8. doi: 10.1038/nsmb.2797. Epub 2014 Mar , 23. PMID:24658351
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (584 Kb) [Save to disk]
  • Biological Unit Coordinates (4mmz.pdb1.gz) 571 Kb
  • LPC: Ligand-Protein Contacts for 4MMZ
  • CSU: Contacts of Structural Units for 4MMZ
  • Structure Factors (1011 Kb)
  • Retrieve 4MMZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MMZ from S2C, [Save to disk]
  • Re-refined 4mmz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4MMZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4MMZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MMZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mmz_A] [4mmz] [4mmz_B] [4mmz_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4MMZ: [FN3] [INB] [Int_alpha] [Integrin_B_tail] [PSI] [VWA ] by SMART
  • Other resources with information on 4MMZ
  • Community annotation for 4MMZ at PDBWiki (http://pdbwiki.org)

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