4N4F Crystal Structure of the Bromodomain-PHD Finger Module of Human Transcriptional Co-Activator CBP in complex with di-Acetylated Histone 4 Peptide (H412acK16ac). date
authors Plotnikov, A.N., Zhou, J., Zhou, M.M.
compound source
symmetry
R_factor
R_Free 0.24055
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.83
ligand ALY, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceStructural Insights into Acetylated-Histone H4 Recognition by the Bromodomain-PHD Finger Module of Human Transcriptional Coactivator CBP., Plotnikov AN, Yang S, Zhou TJ, Rusinova E, Frasca A, Zhou MM, Structure. 2013 Dec 18. pii: S0969-2126(13)00437-1. doi:, 10.1016/j.str.2013.10.021. PMID:24361270
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (4n4f.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4N4F
  • CSU: Contacts of Structural Units for 4N4F
  • Structure Factors (467 Kb)
  • Retrieve 4N4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4N4F from S2C, [Save to disk]
  • Re-refined 4n4f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4N4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4N4F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4N4F, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4n4f] [4n4f_A] [4n4f_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4N4F: [BROMO ] by SMART
  • Other resources with information on 4N4F
  • Community annotation for 4N4F at PDBWiki (http://pdbwiki.org)

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