4N4H Crystal structure of the Bromo-PWWP of the mouse zinc finger MYND-type containing 11 isoform alpha in complex with histone H3.1K36me3 date
authors Li, Y., Ren, Y., Li, H.
compound source
symmetry
R_factor
R_Free 0.2631
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand M3L, PEG, PO4, ZN enzyme
Primary referenceZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression., Wen H, Li Y, Xi Y, Jiang S, Stratton S, Peng D, Tanaka K, Ren Y, Xia Z, Wu J, Li B, Barton MC, Li W, Li H, Shi X, Nature. 2014 Apr 10;508(7495):263-8. doi: 10.1038/nature13045. Epub 2014 Mar 2. PMID:24590075
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (4n4h.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 4N4H
  • CSU: Contacts of Structural Units for 4N4H
  • Structure Factors (143 Kb)
  • Retrieve 4N4H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4N4H from S2C, [Save to disk]
  • Re-refined 4n4h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4N4H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4N4H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4N4H, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4n4h_A] [4n4h_B] [4n4h]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4N4H: [BROMO] [PWWP ] by SMART
    • Other resources with information on 4N4H
  • Community annotation for 4N4H at PDBWiki (http://pdbwiki.org)

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