4N4R Structure basis of lipopolysaccharide biogenesis date
authors Dong, H., Xiang, Q., Wang, Z., Paterson, N.G., He, C., Zhang, Y., Wang, W., Dong, C.
compound source
symmetry
R_factor
R_Free 0.30508
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand CAC, MSE, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceStructural basis for outer membrane lipopolysaccharide insertion., Dong H, Xiang Q, Gu Y, Wang Z, Paterson NG, Stansfeld PJ, He C, Zhang Y, Wang W, Dong C, Nature. 2014 Jul 3;511(7507):52-6. doi: 10.1038/nature13464. Epub 2014 Jun 18. PMID:24990744
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (494 Kb) [Save to disk]
  • Biological Unit Coordinates (4n4r.pdb1.gz) 243 Kb
  • Biological Unit Coordinates (4n4r.pdb2.gz) 243 Kb
  • LPC: Ligand-Protein Contacts for 4N4R
  • CSU: Contacts of Structural Units for 4N4R
  • Structure Factors (990 Kb)
  • Retrieve 4N4R in mmCIF format [Save to disk]
  • Re-refined 4n4r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4N4R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4N4R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4N4R, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4n4r] [4n4r_A] [4n4r_B] [4n4r_C] [4n4r_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4N4R
  • Community annotation for 4N4R at PDBWiki (http://pdbwiki.org)

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