4N7L Zinc Substituted Reaction Center M(L214H) Variant of Rhodobacter sphaeroides date 2013-10-15
authors Hardjasa, A., Murphy, M.E.P.
compound source
symmetry
R_factor
R_Free 0.2157
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.85
ligand 2GO, CDL, FE, GGD, GOL, HTO, LDA, PC1, PO4, SPO, U10 enzyme
Gene
Ontology
ChainFunctionProcessComponent
H
  • electron transporter, transf...


    • L


    M


    Primary referenceStructural and kinetic properties of Rhodobacter sphaeroides photosynthetic reaction centers containing exclusively Zn-coordinated bacteriochlorophyll as bacteriochlorin cofactors., Saer RG, Pan J, Hardjasa A, Lin S, Rosell F, Mauk AG, Woodbury NW, Murphy ME, Beatty JT, Biochim Biophys Acta. 2013 Dec 5;1837(3):366-374. doi:, 10.1016/j.bbabio.2013.11.015. PMID:24316146
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]
  • Biological Unit Coordinates (4n7l.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 4N7L
  • CSU: Contacts of Structural Units for 4N7L
  • Structure Factors (707 Kb)
  • Retrieve 4N7L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4N7L from S2C, [Save to disk]
  • Re-refined 4n7l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4N7L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4N7L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4N7L, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4n7l_M] [4n7l_L] [4n7l_H] [4n7l]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4N7L
  • Community annotation for 4N7L at PDBWiki (http://pdbwiki.org)

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