4N9E Fragment-based Design of 3-Aminopyridine-derived Amides as Potent Inhibitors of Human Nicotinamide Phosphoribosyltransferase (NAMPT) date 2013-10-20
authors Dragovich, P.S., Zhao, G., Baumeister, T., Bravo, B., Giannetti, A.M., Ho, Y., Hua, R., Li, G., Liang, X., Brien, T.O., Skelton, N.J., Wang, C., Zhao, Q., Oh, A., Wang, W., Wang, Y., Xiao, Y., Yuen, P., Zak, M., Zheng, X.
compound source
symmetry
R_factor
R_Free 0.1886
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.72
ligand 2HL, DTT, EDO, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFragment-based design of 3-aminopyridine-derived amides as potent inhibitors of human nicotinamide phosphoribosyltransferase (NAMPT)., Dragovich PS, Zhao G, Baumeister T, Bravo B, Giannetti AM, Ho YC, Hua R, Li G, Liang X, Ma X, O'Brien T, Oh A, Skelton NJ, Wang C, Wang W, Wang Y, Xiao Y, Yuen PW, Zak M, Zhao Q, Zheng X, Bioorg Med Chem Lett. 2014 Feb 1;24(3):954-62. doi: 10.1016/j.bmcl.2013.12.062., Epub 2013 Dec 21. PMID:24433859
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (333 Kb) [Save to disk]
  • Biological Unit Coordinates (4n9e.pdb1.gz) 326 Kb
  • LPC: Ligand-Protein Contacts for 4N9E
  • CSU: Contacts of Structural Units for 4N9E
  • Structure Factors (1931 Kb)
  • Retrieve 4N9E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4N9E from S2C, [Save to disk]
  • Re-refined 4n9e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4N9E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4N9E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4N9E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4n9e_A] [4n9e_B] [4n9e]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4N9E
  • Community annotation for 4N9E at PDBWiki (http://pdbwiki.org)

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