4NAT Inhibitors of 4-Phosphopanthetheine Adenylyltransferase date
authors Lahiri, S.D.
compound source
symmetry
R_factor
R_Free 0.27740
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.72
ligand 2W5, ADP, EPE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceDiscovery of inhibitors of 4'-phosphopantetheine adenylyltransferase (PPAT) to validate PPAT as a target for antibacterial therapy., de Jonge BL, Walkup GK, Lahiri SD, Huynh H, Neckermann G, Utley L, Nash TJ, Brock J, San Martin M, Kutschke A, Johnstone M, Laganas V, Hajec L, Gu RF, Ni H, Chen B, Hutchings K, Holt E, McKinney D, Gao N, Livchak S, Thresher J, Antimicrob Agents Chemother. 2013 Dec;57(12):6005-15. doi: 10.1128/AAC.01661-13. , Epub 2013 Sep 16. PMID:24041904
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (4nat.pdb1.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 4NAT
  • CSU: Contacts of Structural Units for 4NAT
  • Structure Factors (1166 Kb)
  • Retrieve 4NAT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NAT from S2C, [Save to disk]
  • Re-refined 4nat structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NAT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NAT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NAT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nat] [4nat_B] [4nat_A] [4nat_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4NAT
  • Community annotation for 4NAT at PDBWiki (http://pdbwiki.org)

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