4NFI Crystal structure of human FPPS in complex with magnesium and JDS05120 date
authors Park, J., Schutter, J.W.De., Tsantrizos, Y.S., Berghuis, A.M.
compound source
symmetry
R_factor
R_Free 0.19639
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand JD5, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F


Primary referenceCrystallographic and thermodynamic characterization of phenylaminopyridine bisphosphonates binding to human farnesyl pyrophosphate synthase., Park J, Rodionov D, De Schutter JW, Lin YS, Tsantrizos YS, Berghuis AM, PLoS One. 2017 Oct 16;12(10):e0186447. doi: 10.1371/journal.pone.0186447., eCollection 2017. PMID:29036218
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (4nfi.pdb1.gz) 234 Kb
  • LPC: Ligand-Protein Contacts for 4NFI
  • CSU: Contacts of Structural Units for 4NFI
  • Structure Factors (675 Kb)
  • Retrieve 4NFI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NFI from S2C, [Save to disk]
  • Re-refined 4nfi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NFI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NFI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NFI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nfi_F] [4nfi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4NFI
  • Community annotation for 4NFI at PDBWiki (http://pdbwiki.org)

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