4NFJ Crystal structure of human FPPS in complex with magnesium, JDS05120, and sulfate date
authors Park, J., Schutter, J.W.De., Tsantrizos, Y.S., Berghuis, A.M.
compound source
symmetry
R_factor
R_Free 0.21250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.05
ligand JD5, MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F


Primary referenceCrystallographic and thermodynamic characterization of phenylaminopyridine bisphosphonates binding to human farnesyl pyrophosphate synthase., Park J, Rodionov D, De Schutter JW, Lin YS, Tsantrizos YS, Berghuis AM, PLoS One. 2017 Oct 16;12(10):e0186447. doi: 10.1371/journal.pone.0186447., eCollection 2017. PMID:29036218
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (4nfj.pdb1.gz) 225 Kb
  • LPC: Ligand-Protein Contacts for 4NFJ
  • CSU: Contacts of Structural Units for 4NFJ
  • Structure Factors (518 Kb)
  • Retrieve 4NFJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NFJ from S2C, [Save to disk]
  • Re-refined 4nfj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NFJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NFJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NFJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nfj_F] [4nfj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4NFJ
  • Community annotation for 4NFJ at PDBWiki (http://pdbwiki.org)

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