4NGE Crystal Structure of Human Presequence Protease in Complex with Amyloid-beta (1-40) date
authors King, J.V., Liang, W.G., Tang, W.J.
compound source
symmetry
R_factor
R_Free 0.2323
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand ACT, CAS, GOL, MLY, MLZ, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D
  • enzyme activator activity


    • E, B


    Primary referenceMolecular Basis of Substrate Recognition and Degradation by Human Presequence Protease., King JV, Liang WG, Scherpelz KP, Schilling AB, Meredith SC, Tang WJ, Structure. 2014 Jun 11. pii: S0969-2126(14)00143-9. doi:, 10.1016/j.str.2014.05.003. PMID:24931469
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (338 Kb) [Save to disk]
  • Biological Unit Coordinates (4nge.pdb1.gz) 168 Kb
  • Biological Unit Coordinates (4nge.pdb2.gz) 167 Kb
  • LPC: Ligand-Protein Contacts for 4NGE
  • CSU: Contacts of Structural Units for 4NGE
  • Structure Factors (562 Kb)
  • Retrieve 4NGE in mmCIF format [Save to disk]
  • Re-refined 4nge structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NGE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NGE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NGE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nge_E] [4nge_B] [4nge_C] [4nge_A] [4nge_F] [4nge_D] [4nge]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NGE: [M16C_associated ] by SMART
    • Other resources with information on 4NGE
  • Community annotation for 4NGE at PDBWiki (http://pdbwiki.org)

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