4NLK Structure of human DNA polymerase beta complexed with 8BrG in the template base-paired with incoming non-hydrolyzable CTP date 2013-11-14
authors Koag, M.C., Min, K., Monzingo, A.F., Lee, S.
compound source
symmetry
R_factor
R_Free 0.2695
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.49
ligand 0KX, BGM, MG, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for promutagenicity of 8-halogenated guanine., Koag MC, Min K, Lee S, J Biol Chem. 2014 Jan 14. PMID:24425881
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (4nlk.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 4NLK
  • CSU: Contacts of Structural Units for 4NLK
  • Structure Factors (106 Kb)
  • Retrieve 4NLK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NLK from S2C, [Save to disk]
  • Re-refined 4nlk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NLK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NLK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NLK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nlk_D] [4nlk_A] [4nlk_P] [4nlk] [4nlk_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4NLK: [HhH1] [POLXc ] by SMART
    • Other resources with information on 4NLK
  • Community annotation for 4NLK at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science