4NM1 Structure of human DNA polymerase beta complexed with a nicked DNA containing a 8BrG-C at N-1 position and G-C at N position date 2013-11-14
authors Koag, M.C., Min, K., Monzingo, A.F., Lee, S.
compound source
symmetry
R_factor
R_Free 0.2561
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.42
ligand BGM, MG, NA, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for promutagenicity of 8-halogenated guanine., Koag MC, Min K, Lee S, J Biol Chem. 2014 Jan 14. PMID:24425881
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (4nm1.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 4NM1
  • CSU: Contacts of Structural Units for 4NM1
  • Structure Factors (120 Kb)
  • Retrieve 4NM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NM1 from S2C, [Save to disk]
  • Re-refined 4nm1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NM1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NM1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NM1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nm1] [4nm1_A] [4nm1_D] [4nm1_P] [4nm1_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4NM1: [HhH1] [POLXc ] by SMART
    • Other resources with information on 4NM1
  • Community annotation for 4NM1 at PDBWiki (http://pdbwiki.org)

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