4NRP Crystal structure of human ALKBH5 in complex with N-oxalylglycine date 2013-11-27
authors Feng, C., Chen, Z., Liu, Y.
compound source
symmetry
R_factor
R_Free 0.21765
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand MN, OGA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of the human RNA demethylase Alkbh5 reveal basis for substrate recognition., Feng C, Liu Y, Wang G, Deng Z, Zhang Q, Wu W, Tong Y, Cheng C, Chen Z, J Biol Chem. 2014 Apr 25;289(17):11571-83. doi: 10.1074/jbc.M113.546168. Epub, 2014 Mar 10. PMID:24616105
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (4nrp.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 4NRP
  • CSU: Contacts of Structural Units for 4NRP
  • Structure Factors (168 Kb)
  • Retrieve 4NRP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NRP from S2C, [Save to disk]
  • Re-refined 4nrp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NRP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NRP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NRP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nrp] [4nrp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4NRP
  • Community annotation for 4NRP at PDBWiki (http://pdbwiki.org)

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