4NRV Crystal Structure of non-edited human NEIL1 date 2013-11-27
authors Prakash, A., Doublie, S.
compound source
symmetry
R_factor
R_Free 0.2320
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand TRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGenome and cancer single nucleotide polymorphisms of the human NEIL1 DNA glycosylase: Activity, structure, and the effect of editing., Prakash A, Carroll BL, Sweasy JB, Wallace SS, Doublie S, DNA Repair (Amst). 2014 Feb;14:17-26. doi: 10.1016/j.dnarep.2013.12.003. Epub, 2013 Dec 29. PMID:24382305
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (4nrv.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 4NRV
  • CSU: Contacts of Structural Units for 4NRV
  • Structure Factors (690 Kb)
  • Retrieve 4NRV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NRV from S2C, [Save to disk]
  • Re-refined 4nrv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NRV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NRV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NRV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nrv_A] [4nrv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4NRV: [Fapy_DNA_glyco] [H2TH ] by SMART
    • Other resources with information on 4NRV
  • Community annotation for 4NRV at PDBWiki (http://pdbwiki.org)

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