4NT1 Crystal structure of apo-form of Arabidopsis ACD11 (accelerated-cell-death 11) at 1.8 Angstrom resolution date 2013-11-29
authors Simanshu, D.K., Brown, R.E., Patel, D.J.
compound source
symmetry
R_factor
R_Free 0.2129
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand KCX, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • ceramide 1-phosphate transpo...


    • Primary referenceArabidopsis Accelerated Cell Death 11, ACD11, Is a Ceramide-1-Phosphate Transfer Protein and Intermediary Regulator of Phytoceramide Levels., Simanshu DK, Zhai X, Munch D, Hofius D, Markham JE, Bielawski J, Bielawska A, Malinina L, Molotkovsky JG, Mundy JW, Patel DJ, Brown RE, Cell Rep. 2014 Jan 30;6(2):388-99. doi: 10.1016/j.celrep.2013.12.023. Epub 2014, Jan 9. PMID:24412362
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (4nt1.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (4nt1.pdb2.gz) 38 Kb
  • Biological Unit Coordinates (4nt1.pdb3.gz) 37 Kb
  • Biological Unit Coordinates (4nt1.pdb4.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4NT1
  • CSU: Contacts of Structural Units for 4NT1
  • Structure Factors (1298 Kb)
  • Retrieve 4NT1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NT1 from S2C, [Save to disk]
  • Re-refined 4nt1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NT1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NT1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NT1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nt1] [4nt1_C] [4nt1_D] [4nt1_A] [4nt1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4NT1
  • Community annotation for 4NT1 at PDBWiki (http://pdbwiki.org)

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