4NXS Crystal structure of human alpha-galactosidase A in complex with 1-deoxygalactonojirimycin-pFPhT date
authors Johnson, J.L., Drury, J.E., Lieberman, R.L.
compound source
symmetry
R_factor
R_Free 0.2317
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.55
ligand 2OZ, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMolecular Basis of 1-Deoxygalactonojirimycin Arylthiourea Binding to Human alpha-Galactosidase A: Pharmacological Chaperoning Efficacy on Fabry Disease Mutants., Yu Y, Mena-Barragan T, Higaki K, Johnson JL, Drury JE, Lieberman RL, Nakasone N, Ninomiya H, Tsukimura T, Sakuraba H, Suzuki Y, Nanba E, Mellet CO, Garcia Fernandez JM, Ohno K, ACS Chem Biol. 2014 May 12. PMID:24783948
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (270 Kb) [Save to disk]
  • Biological Unit Coordinates (4nxs.pdb1.gz) 262 Kb
  • LPC: Ligand-Protein Contacts for 4NXS
  • CSU: Contacts of Structural Units for 4NXS
  • Structure Factors (229 Kb)
  • Retrieve 4NXS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NXS from S2C, [Save to disk]
  • Re-refined 4nxs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NXS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NXS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NXS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nxs] [4nxs_B] [4nxs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4NXS
  • Community annotation for 4NXS at PDBWiki (http://pdbwiki.org)

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