4NY6 Neutron structure of leucine and valine methyl protonated type III antifreeze date
authors Fisher, S.J., Blakeley, M.P., Howard, E.I., Petite-Haertlein, I., Haertlein, M., Mitschler, A., Cousido-Siah, A., Salvaya, A.G., Popov, A., Muller-Dieckmann, C., Petrova, T., Podjarny, A.D.
compound source
symmetry
R_factor
R_Free 0.1881
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.05
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePerdeuteration: improved visualization of solvent structure in neutron macromolecular crystallography., Fisher SJ, Blakeley MP, Howard EI, Petit-Haertlein I, Haertlein M, Mitschler A, Cousido-Siah A, Salvay AG, Popov A, Muller-Dieckmann C, Petrova T, Podjarny A, Acta Crystallogr D Biol Crystallogr. 2014 Dec 1;70(Pt 12):3266-72. doi:, 10.1107/S1399004714021610. Epub 2014 Nov 28. PMID:25478844
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (4ny6.pdb1.gz) 37 Kb
  • CSU: Contacts of Structural Units for 4NY6
  • Structure Factors (423 Kb)
  • Retrieve 4NY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NY6 from S2C, [Save to disk]
  • Re-refined 4ny6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NY6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NY6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ny6_A] [4ny6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4NY6
  • Community annotation for 4NY6 at PDBWiki (http://pdbwiki.org)

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