4NYK Structure of a membrane protein date 2013-12-10
authors Baconguis, I., Bohlen, C.J., Goehring, A., Julius, D., Gouaux, E.
compound source
symmetry
R_factor
R_Free 0.2461
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand CL enzyme
note 4NYK supersedes 3HGC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePore architecture and ion sites in acid-sensing ion channels and P2X receptors., Gonzales EB, Kawate T, Gouaux E, Nature. 2009 Jul 30;460(7255):599-604. PMID:19641589
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (4nyk.pdb1.gz) 197 Kb
  • LPC: Ligand-Protein Contacts for 4NYK
  • CSU: Contacts of Structural Units for 4NYK
  • Structure Factors (128 Kb)
  • Retrieve 4NYK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NYK from S2C, [Save to disk]
  • Re-refined 4nyk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NYK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NYK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NYK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nyk_A] [4nyk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4NYK
  • Community annotation for 4NYK at PDBWiki (http://pdbwiki.org)

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