4O6M Structure of AF2299, a CDP-alcohol phosphotransferase (CMP-bound) date
authors Clarke, O.B., Sciara, G., Tomasek, D., Banerjee, S., Rajashankar, K.R., Shapiro, L., Mancia, F., NYCOMPS, New.York.Consortium.on.Membrane.Protein.Structure.
compound source
symmetry
R_factor
R_Free 0.2235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand C5P, CA, MPG, SO4 enzyme
Gene AF
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for catalysis in a CDP-alcohol phosphotransferase., Sciara G, Clarke OB, Tomasek D, Kloss B, Tabuso S, Byfield R, Cohn R, Banerjee S, Rajashankar KR, Slavkovic V, Graziano JH, Shapiro L, Mancia F, Nat Commun. 2014 Jun 13;5:4068. doi: 10.1038/ncomms5068. PMID:24923293
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk]
  • Biological Unit Coordinates (4o6m.pdb1.gz) 209 Kb
  • LPC: Ligand-Protein Contacts for 4O6M
  • CSU: Contacts of Structural Units for 4O6M
  • Structure Factors (3720 Kb)
  • Retrieve 4O6M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O6M from S2C, [Save to disk]
  • Re-refined 4o6m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4O6M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4O6M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4O6M, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o6m] [4o6m_B] [4o6m_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4O6M
  • Community annotation for 4O6M at PDBWiki (http://pdbwiki.org)

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