4O6Y Crystal Structure of Cytochrome b561 date 2013-12-24
authors Lu, P., Ma, D., Yan, C., Gong, X., Du, M., Shi, Y.
compound source
symmetry
R_factor
R_Free 0.2160
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand HEM, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and mechanism of a eukaryotic transmembrane ascorbate-dependent oxidoreductase., Lu P, Ma D, Yan C, Gong X, Du M, Shi Y, Proc Natl Acad Sci U S A. 2014 Jan 21. PMID:24449903
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (4o6y.pdb1.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 4O6Y
  • CSU: Contacts of Structural Units for 4O6Y
  • Structure Factors (773 Kb)
  • Retrieve 4O6Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O6Y from S2C, [Save to disk]
  • Re-refined 4o6y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4O6Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4O6Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4O6Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o6y_A] [4o6y_B] [4o6y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4O6Y: [B561 ] by SMART
    • Other resources with information on 4O6Y
  • Community annotation for 4O6Y at PDBWiki (http://pdbwiki.org)

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