4OA5 X-ray crystal structure of an O-methyltransferase from Anaplasma phagocytophilum bound to SAH solved by iodide SAD phasing date 2014-01-03
authors SSGCID, Seattle.Structural.Genomics.Center.for.Infectious.Disease.
compound source
symmetry
R_factor
R_Free 0.23101
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand EDO, GOL, IOD, SAH enzyme
Gene APH
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceAn O-Methyltransferase Is Required for Infection of Tick Cells by Anaplasma phagocytophilum., Oliva Chavez AS, Fairman JW, Felsheim RF, Nelson CM, Herron MJ, Higgins L, Burkhardt NY, Oliver JD, Markowski TW, Kurtti TJ, Edwards TE, Munderloh UG, PLoS Pathog. 2015 Nov 6;11(11):e1005248. doi: 10.1371/journal.ppat.1005248., eCollection 2015 Nov. PMID:26544981
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (431 Kb) [Save to disk]
  • Biological Unit Coordinates (4oa5.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (4oa5.pdb2.gz) 73 Kb
  • Biological Unit Coordinates (4oa5.pdb3.gz) 74 Kb
  • Biological Unit Coordinates (4oa5.pdb4.gz) 74 Kb
  • Biological Unit Coordinates (4oa5.pdb5.gz) 75 Kb
  • Biological Unit Coordinates (4oa5.pdb6.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 4OA5
  • CSU: Contacts of Structural Units for 4OA5
  • Structure Factors (1892 Kb)
  • Retrieve 4OA5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OA5 from S2C, [Save to disk]
  • Re-refined 4oa5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OA5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OA5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OA5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oa5_C] [4oa5] [4oa5_D] [4oa5_B] [4oa5_E] [4oa5_A] [4oa5_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4OA5
  • Community annotation for 4OA5 at PDBWiki (http://pdbwiki.org)

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