4OCT Crystal structure of human ALKBH5 crystallized in the presence of Mn^{2+} and 2-oxoglutarate date 2014-01-09
authors Tempel, W., Chao, X., Liu, K., Dong, A., Cerovina, T., He, H., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.2841
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.28
ligand AKG, MN, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructures of human ALKBH5 demethylase reveal a unique binding mode for specific single stranded m6A RNA demethylation., Xu C, Liu K, Tempel W, Demetriades M, Aik W, Schofield CJ, Min J, J Biol Chem. 2014 Apr 28. PMID:24778178
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (4oct.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (4oct.pdb2.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 4OCT
  • CSU: Contacts of Structural Units for 4OCT
  • Structure Factors (2187 Kb)
  • Retrieve 4OCT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OCT from S2C, [Save to disk]
  • Re-refined 4oct structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OCT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OCT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OCT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oct_A] [4oct_B] [4oct]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4OCT
  • Community annotation for 4OCT at PDBWiki (http://pdbwiki.org)

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