4ODF Co-Crystal Structure of MDM2 with Inhibitor Compound 47 date
authors Shaffer, P.L., Huang, X., Yakowec, P., Long, A.M.
compound source
symmetry
R_factor
R_Free 0.3048
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand 2U1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNovel Inhibitors of the MDM2-p53 Interaction Featuring Hydrogen Bond Acceptors as Carboxylic Acid Isosteres., Gonzalez AZ, Li Z, Beck HP, Canon J, Chen A, Chow D, Duquette J, Eksterowicz J, Fox BM, Fu J, Huang X, Houze J, Jin L, Li Y, Ling Y, Lo MC, Long AM, McGee LR, McIntosh J, Oliner JD, Osgood T, Rew Y, Saiki AY, Shaffer P, Wortman S, Yakowec P, Yan X, Ye Q, Yu D, Zhao X, Zhou J, Olson SH, Sun D, Medina JC, J Med Chem. 2014 Mar 27. PMID:24601644
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (4odf.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 4ODF
  • CSU: Contacts of Structural Units for 4ODF
  • Structure Factors (45 Kb)
  • Retrieve 4ODF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ODF from S2C, [Save to disk]
  • Re-refined 4odf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ODF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ODF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ODF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4odf_A] [4odf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ODF
  • Community annotation for 4ODF at PDBWiki (http://pdbwiki.org)

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