4OGF	Crystal Structure of Human DJ-1 with glyoxylate as substrate analog	date
authors	Choi, D., Kim, J., Ryu, K.S., Park, C.
compound		source
symmetry		R_factor R_Free 0.2347
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.60
ligand	CGV	enzyme
Gene Ontology	Chain Function Process Component A transcription coactivator ac... peroxiredoxin activity glyoxalase (glycolic acid-fo... synaptic transmission, dopam... negative regulation of prote... positive regulation of pepti... dopamine uptake involved in ... positive regulation of L-dop...
Primary reference	Stereospecific mechanism of DJ-1 glyoxalases inferred from their hemithioacetal-containing crystal structures., Choi D, Kim J, Ha S, Kwon K, Kim EH, Lee HY, Ryu KS, Park C, FEBS J. 2014 Oct 4. doi: 10.1111/febs.13085. PMID:25283443

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk] Biological Unit Coordinates (4ogf.pdb1.gz) 59 Kb LPC: Ligand-Protein Contacts for 4OGF CSU: Contacts of Structural Units for 4OGF Structure Factors (352 Kb) Retrieve 4OGF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4OGF from S2C, [Save to disk] Re-refined 4ogf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4OGF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4OGF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4OGF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ogf_A] [4ogf] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4OGF

Community annotation for 4OGF at PDBWiki (http://pdbwiki.org)

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