4OGV Co-Crystal Structure of MDM2 with Inhibitor Compound 49 date 2014-01-16
authors Shaffer, P.L., Huang, X., Yakowec, P., Long, A.M.
compound source
symmetry
R_factor
R_Free 0.2835
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand 2U7 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceNovel Inhibitors of the MDM2-p53 Interaction Featuring Hydrogen Bond Acceptors as Carboxylic Acid Isosteres., Gonzalez AZ, Li Z, Beck HP, Canon J, Chen A, Chow D, Duquette J, Eksterowicz J, Fox BM, Fu J, Huang X, Houze J, Jin L, Li Y, Ling Y, Lo MC, Long AM, McGee LR, McIntosh J, Oliner JD, Osgood T, Rew Y, Saiki AY, Shaffer P, Wortman S, Yakowec P, Yan X, Ye Q, Yu D, Zhao X, Zhou J, Olson SH, Sun D, Medina JC, J Med Chem. 2014 Mar 27. PMID:24601644
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (4ogv.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (4ogv.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (4ogv.pdb3.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 4OGV
  • CSU: Contacts of Structural Units for 4OGV
  • Structure Factors (335 Kb)
  • Retrieve 4OGV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OGV from S2C, [Save to disk]
  • Re-refined 4ogv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OGV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OGV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OGV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ogv_A] [4ogv_C] [4ogv] [4ogv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4OGV
  • Community annotation for 4OGV at PDBWiki (http://pdbwiki.org)

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