4OJF Humanised 3D6 Fab complexed to amyloid beta 1-8 date
authors Miles, L.A., Crespi, G.A.N., Parker, M.W.
compound source
symmetry
R_factor
R_Free 0.2147
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
Primary referenceCrystallization and preliminary X-ray diffraction analysis of the Fab portion of the Alzheimer's disease immunotherapy candidate bapineuzumab complexed with amyloid-beta., Crespi GA, Ascher DB, Parker MW, Miles LA, Acta Crystallogr F Struct Biol Commun. 2014 Mar;70(Pt 3):374-7. doi:, 10.1107/S2053230X14001642. Epub 2014 Feb 20. PMID:24598931
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (4ojf.pdb1.gz) 136 Kb
  • CSU: Contacts of Structural Units for 4OJF
  • Structure Factors (444 Kb)
  • Retrieve 4OJF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OJF from S2C, [Save to disk]
  • Re-refined 4ojf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OJF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OJF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OJF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ojf] [4ojf_H] [4ojf_A] [4ojf_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4OJF: [IG_like] [IGv ] by SMART
  • Other resources with information on 4OJF
  • Community annotation for 4OJF at PDBWiki (http://pdbwiki.org)

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