4OO8 Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNA date
authors Nishimasu, H., Ishitani, R., Nureki, O.
compound source
symmetry
R_factor
R_Free 0.2536
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
note 4OO8 (Molecule of the Month:pdb181)
Gene
Ontology
ChainFunctionProcessComponent
A, D
  • nuclease activity
  • endonuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


  • Primary referenceCrystal structure of Cas9 in complex with guide RNA and target DNA., Nishimasu H, Ran FA, Hsu PD, Konermann S, Shehata SI, Dohmae N, Ishitani R, Zhang F, Nureki O, Cell. 2014 Feb 27;156(5):935-49. doi: 10.1016/j.cell.2014.02.001. Epub 2014 Feb, 13. PMID:24529477
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1004 Kb) [Save to disk]
  • Biological Unit Coordinates (4oo8.pdb1.gz) 520 Kb
  • Biological Unit Coordinates (4oo8.pdb2.gz) 479 Kb
  • CSU: Contacts of Structural Units for 4OO8
  • Structure Factors (1191 Kb)
  • Retrieve 4OO8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OO8 from S2C, [Save to disk]
  • Re-refined 4oo8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OO8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OO8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OO8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oo8_E] [4oo8] [4oo8_A] [4oo8_B] [4oo8_C] [4oo8_D] [4oo8_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4OO8
  • Community annotation for 4OO8 at PDBWiki (http://pdbwiki.org)

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