4OO9 Structure of the human class C GPCR metabotropic glutamate receptor 5 transmembrane domain in complex with the negative allosteric modulator mavoglurant date
authors Dore, A.S., Okrasa, K., Patel, J.C., Serrano-Vega, M., Bennett, K., Cooke, R.M., Errey, J.C., Jazayeri, A., Khan, S., Tehan, B., Weir, M., Wiggin, G.R., Marshall, F.H.
compound source
symmetry
R_factor
R_Free 0.2747
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand 2U8, MES, OLA, YCM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of class C GPCR metabotropic glutamate receptor 5 transmembrane domain., Dore AS, Okrasa K, Patel JC, Serrano-Vega M, Bennett K, Cooke RM, Errey JC, Jazayeri A, Khan S, Tehan B, Weir M, Wiggin GR, Marshall FH, Nature. 2014 Jul 31;511(7511):557-62. doi: 10.1038/nature13396. Epub 2014 Jul 6. PMID:25042998
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (4oo9.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 4OO9
  • CSU: Contacts of Structural Units for 4OO9
  • Structure Factors (168 Kb)
  • Retrieve 4OO9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OO9 from S2C, [Save to disk]
  • Re-refined 4oo9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OO9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OO9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OO9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oo9_A] [4oo9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4OO9
  • Community annotation for 4OO9 at PDBWiki (http://pdbwiki.org)

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