4OR5 Crystal structure of HIV-1 Tat complexed with human P-TEFb and AFF4 date 2014-02-10
authors Gu, J., Babayeva, N.D., Suwa, Y., Baranovskiy, A.G., Price, D.H., Tahirov, T.H.
compound source
symmetry
R_factor
R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand SO4, TPO, YT3, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A


G, B


H, C


J, E


Primary referenceCrystal structure of HIV-1 Tat complexed with human P-TEFb and AFF4., Gu J, Babayeva ND, Suwa Y, Baranovskiy AG, Price DH, Tahirov TH, Cell Cycle. 2014 Jun 1;13(11):1788-97. doi: 10.4161/cc.28756. Epub 2014 Apr 11. PMID:24727379
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (4or5.pdb1.gz) 114 Kb
  • Biological Unit Coordinates (4or5.pdb2.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 4OR5
  • CSU: Contacts of Structural Units for 4OR5
  • Structure Factors (957 Kb)
  • Retrieve 4OR5 in mmCIF format [Save to disk]
  • Re-refined 4or5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OR5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OR5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OR5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4or5_J] [4or5_H] [4or5_A] [4or5_G] [4or5_E] [4or5_F] [4or5_B] [4or5_C] [4or5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4OR5: [CYCLIN] [S_TKc ] by SMART
    • Other resources with information on 4OR5
  • Community annotation for 4OR5 at PDBWiki (http://pdbwiki.org)

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