4OTF Crystal structure of the kinase domain of Bruton's Tyrosine kinase with GDC0834 date
authors Hymowitz, S.G., Maurer, B.
compound source
symmetry
R_factor
R_Free 0.20251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand 2VL, OCS, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePotent and selective Bruton's tyrosine kinase inhibitors: Discovery of GDC-0834., Young WB, Barbosa J, Blomgren P, Bremer MC, Crawford JJ, Dambach D, Gallion S, Hymowitz SG, Kropf JE, Lee SH, Liu L, Lubach JW, Macaluso J, Maciejewski P, Maurer B, Mitchell SA, Ortwine DF, Di Paolo J, Reif K, Scheerens H, Schmitt A, Sowell CG, Wang X, Wong H, Xiong JM, Xu J, Zhao Z, Currie KS, Bioorg Med Chem Lett. 2015 Mar 15;25(6):1333-7. doi: 10.1016/j.bmcl.2015.01.032. , Epub 2015 Feb 7. PMID:25701252
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (4otf.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 4OTF
  • CSU: Contacts of Structural Units for 4OTF
  • Structure Factors (394 Kb)
  • Retrieve 4OTF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OTF from S2C, [Save to disk]
  • Re-refined 4otf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OTF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OTF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OTF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4otf] [4otf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OTF: [TyrKc ] by SMART
  • Other resources with information on 4OTF
  • Community annotation for 4OTF at PDBWiki (http://pdbwiki.org)

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