4OTR Crystal structure of BTK kinase domain complexed with 6-cyclopropyl-2-[3-[5-[[5-(4-ethylpiperazin-1-yl)-2-pyridyl]amino]-1-methyl-6-oxo-3-pyridyl]-2-(hydroxymethyl)phenyl]-8-fluoro-isoquinolin-1-one date
authors Kuglstatter, A., Wong, A.
compound source
symmetry
R_factor
R_Free 0.22921
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand 2V3, DMS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-Based Drug Design of RN486, a Potent and Selective Bruton's Tyrosine Kinase (BTK) Inhibitor, for the Treatment of Rheumatoid Arthritis., Lou Y, Han X, Kuglstatter A, Kondru RK, Sweeney ZK, Soth M, McIntosh J, Litman R, Suh J, Kocer B, Davis D, Park J, Frauchiger S, Dewdney N, Zecic H, Taygerly JP, Sarma K, Hong J, Hill RJ, Gabriel T, Goldstein DM, Owens TD, J Med Chem. 2014 Apr 16. PMID:24712864
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (4otr.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 4OTR
  • CSU: Contacts of Structural Units for 4OTR
  • Structure Factors (330 Kb)
  • Retrieve 4OTR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OTR from S2C, [Save to disk]
  • Re-refined 4otr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OTR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OTR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OTR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4otr] [4otr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OTR: [TyrKc ] by SMART
    • Other resources with information on 4OTR
  • Community annotation for 4OTR at PDBWiki (http://pdbwiki.org)

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