4OTY Crystal structure of lumiracoxib bound to the apo-mouse-cyclooxygenase-2 date 2014-02-14
authors Xu, S., Windsor, M.A., Banerjee, S., Marnett, L.J.
compound source
symmetry
R_factor
R_Free 0.2214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand BOG, LUR, NAG enzyme
note 4OTY supersedes 4LLZ
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • peroxidase activity


    • Primary referenceExploring the molecular determinants of substrate-selective inhibition of cyclooxygenase-2 by lumiracoxib., Windsor MA, Valk PL, Xu S, Banerjee S, Marnett LJ, Bioorg Med Chem Lett. 2013 Nov 1;23(21):5860-5864. doi:, 10.1016/j.bmcl.2013.08.097. Epub 2013 Sep 6. PMID:24060487
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (380 Kb) [Save to disk]
  • Biological Unit Coordinates (4oty.pdb1.gz) 372 Kb
  • LPC: Ligand-Protein Contacts for 4OTY
  • CSU: Contacts of Structural Units for 4OTY
  • Structure Factors (1110 Kb)
  • Retrieve 4OTY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OTY from S2C, [Save to disk]
  • Re-refined 4oty structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OTY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OTY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OTY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oty] [4oty_A] [4oty_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OTY: [EGF ] by SMART
    • Other resources with information on 4OTY
  • Community annotation for 4OTY at PDBWiki (http://pdbwiki.org)

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