4OUL Crystal structure of human Caprin-2 C1q domain date
authors Song, X., Li, L.
compound source
symmetry
R_factor
R_Free 0.2512
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand CA, GOL enzyme
Primary referenceStructural insights into the C1q domain of Caprin-2 in canonical Wnt signaling., Miao H, Jia Y, Xie S, Wang X, Zhao J, Chu Y, Zhou Z, Shi Z, Song X, Li L, J Biol Chem. 2014 Dec 5;289(49):34104-13. doi: 10.1074/jbc.M114.591636. Epub 2014, Oct 20. PMID:25331957
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (4oul.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (4oul.pdb2.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 4OUL
  • CSU: Contacts of Structural Units for 4OUL
  • Structure Factors (693 Kb)
  • Retrieve 4OUL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OUL from S2C, [Save to disk]
  • Re-refined 4oul structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OUL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OUL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OUL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oul_B] [4oul_D] [4oul_E] [4oul_F] [4oul] [4oul_A] [4oul_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OUL: [C1Q ] by SMART
  • Other resources with information on 4OUL
  • Community annotation for 4OUL at PDBWiki (http://pdbwiki.org)

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