4OZF JR5.1 protein complex date 2014-02-15
authors Petersen, J., Reid, H.H., Rossjohn, J.
compound source
symmetry
R_factor
R_Free 0.2384
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceT-cell receptor recognition of HLA-DQ2-gliadin complexes associated with celiac disease., Petersen J, Montserrat V, Mujico JR, Loh KL, Beringer DX, van Lummel M, Thompson A, Mearin ML, Schweizer J, Kooy-Winkelaar Y, van Bergen J, Drijfhout JW, Kan WT, La Gruta NL, Anderson RP, Reid HH, Koning F, Rossjohn J, Nat Struct Mol Biol. 2014 May;21(5):480-8. doi: 10.1038/nsmb.2817. Epub 2014 Apr , 28. PMID:24777060
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]
  • Biological Unit Coordinates (4ozf.pdb1.gz) 267 Kb
  • LPC: Ligand-Protein Contacts for 4OZF
  • CSU: Contacts of Structural Units for 4OZF
  • Structure Factors (819 Kb)
  • Retrieve 4OZF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OZF from S2C, [Save to disk]
  • Re-refined 4ozf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OZF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OZF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OZF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ozf_A] [4ozf_J] [4ozf_H] [4ozf_B] [4ozf] [4ozf_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4OZF: [IG] [IG_like] [IGc1] [IGv] [MHC_II_alpha] [MHC_II_beta ] by SMART
    • Other resources with information on 4OZF
  • Community annotation for 4OZF at PDBWiki (http://pdbwiki.org)

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