4OZH S16 protein complex date 2014-02-16
authors Petersen, J., Reid, H.H., Rossjohn, J.
compound source
symmetry
R_factor
R_Free 0.2429
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand CA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceT-cell receptor recognition of HLA-DQ2-gliadin complexes associated with celiac disease., Petersen J, Montserrat V, Mujico JR, Loh KL, Beringer DX, van Lummel M, Thompson A, Mearin ML, Schweizer J, Kooy-Winkelaar Y, van Bergen J, Drijfhout JW, Kan WT, La Gruta NL, Anderson RP, Reid HH, Koning F, Rossjohn J, Nat Struct Mol Biol. 2014 May;21(5):480-8. doi: 10.1038/nsmb.2817. Epub 2014 Apr , 28. PMID:24777060
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (537 Kb) [Save to disk]
  • Biological Unit Coordinates (4ozh.pdb1.gz) 267 Kb
  • Biological Unit Coordinates (4ozh.pdb2.gz) 268 Kb
  • LPC: Ligand-Protein Contacts for 4OZH
  • CSU: Contacts of Structural Units for 4OZH
  • Structure Factors (1099 Kb)
  • Retrieve 4OZH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OZH from S2C, [Save to disk]
  • Re-refined 4ozh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OZH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OZH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OZH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ozh_E] [4ozh_A] [4ozh_D] [4ozh_B] [4ozh] [4ozh_I] [4ozh_J] [4ozh_C] [4ozh_F] [4ozh_G] [4ozh_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4OZH: [IG] [IG_like] [IGc1] [IGv] [MHC_II_alpha] [MHC_II_beta ] by SMART
    • Other resources with information on 4OZH
  • Community annotation for 4OZH at PDBWiki (http://pdbwiki.org)

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